STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_24657Putative tRNA-splicing endonuclease subunit Sen34. (249 aa)    
Predicted Functional Partners:
BSL78_29723
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
 0.967
BSL78_24322
Putative tRNA-splicing endonuclease subunit Sen15.
    
 0.929
BSL78_01003
Putative tRNA-splicing endonuclease subunit Sen15.
    
 0.929
BSL78_20674
Putative tRNA-splicing endonuclease subunit Sen54-like.
   
 0.751
BSL78_20673
tRNA_int_end_N2 domain-containing protein.
   
 0.751
BSL78_04236
tRNA_int_end_N2 domain-containing protein.
   
 0.751
BSL78_11600
Putative DNA-directed RNA polymerase III subunit RPC5-like.
   
    0.651
BSL78_15191
Uncharacterized protein.
    
 0.577
BSL78_00846
Putative polyribonucleotide 5'-hydroxyl-kinase Clp1.
    
 0.577
BSL78_00847
Putative polyribonucleotide 5'-hydroxyl-kinase Clp1.
    
 0.577
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.