STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_22489Putative gamma-butyrobetaine dioxygenase-like isoform X2. (508 aa)    
Predicted Functional Partners:
BSL78_07321
Putative thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3 isoform X1.
     
 0.706
BSL78_05771
Aldehyde dehydrogenase 7A1.
   
 0.698
BSL78_12800
Putative trimethyllysine dioxygenase, mitochondrial isoform X1.
  
  
0.683
BSL78_25590
Putative trimethyllysine dioxygenase, mitochondrial isoform X1.
  
  
0.681
BSL78_10064
Putative NAD(P)H:quinone oxidoreductase.
  
 
  0.667
BSL78_04921
Uncharacterized protein.
  
 
 0.650
BSL78_00823
Putative asparagine synthetase.
  
 
 0.650
BSL78_11873
Putative sulfite oxidase.
    
  0.638
BSL78_20159
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
 
 0.636
BSL78_22631
Putative FAD synthase.
     
 0.629
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.