STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_21254Polyketide synthase 2. (1022 aa)    
Predicted Functional Partners:
BSL78_21253
Polyketide synthase.
 
     0.950
BSL78_01993
Putative acyl-CoA synthetase family member 4-like.
  
 0.860
BSL78_20141
ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family.
   
 0.802
BSL78_09712
Putative ATP-citrate synthase.
   
 0.802
BSL78_09713
Putative ATP-citrate synthase.
   
 0.802
BSL78_28941
Polyketide synthase 2.
 
0.796
BSL78_21642
SCP2 domain-containing protein.
   
 0.782
BSL78_21229
Putative acyl-CoA synthetase family member 3, mitochondrial.
  
 0.766
BSL78_14278
Putative ATP-citrate synthase-like.
   
 0.752
BSL78_07341
Putative long-chain-fatty-acid--CoA ligase 4-like.
  
 
 0.750
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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