STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_17958Putative latent-transforming growth factor beta-binding protein 4. (553 aa)    
Predicted Functional Partners:
BSL78_13675
Chordin.
    
 
 0.606
BSL78_22832
Uncharacterized protein.
  
 
  0.605
BSL78_30097
Putative lysosomal Pro-X carboxypeptidase.
     
 0.541
BSL78_04785
Uncharacterized protein.
     
 0.541
BSL78_04789
Putative dipeptidyl peptidase 2-like.
     
 0.541
BSL78_09379
Putative xaa-Pro aminopeptidase 1 isoform X1; Belongs to the peptidase M24B family.
    
 0.525
BSL78_07517
Uncharacterized protein.
    
 0.525
BSL78_04638
Uncharacterized protein; Belongs to the peptidase M24B family.
    
 0.525
BSL78_23328
Uncharacterized protein.
  
     0.446
BSL78_23358
Putative cubilin.
    
 
0.419
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.