STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_17348Putative F-box/LRR-repeat protein 16 isoform X2. (353 aa)    
Predicted Functional Partners:
BSL78_09113
S-phase kinase associated protein 1-like protein; Belongs to the SKP1 family.
   
 0.899
BSL78_18091
Putative transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.753
BSL78_13405
Putative RING-box protein 1A.
    
 0.720
BSL78_24736
Putative cullin-1; Belongs to the cullin family.
    
 0.711
BSL78_12688
Putative cullin-1; Belongs to the cullin family.
    
 0.711
BSL78_25550
Putative COMM domain-containing protein 4.
    
 0.668
BSL78_07494
COMM domain-containing protein 4.
    
 0.668
BSL78_10913
RING-box protein 2.
    
 0.652
BSL78_06777
Uncharacterized protein.
    
 0.652
BSL78_15071
Uncharacterized protein.
    
  0.625
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.