STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_17108Putative coiled-coil domain-containing protein. (810 aa)    
Predicted Functional Partners:
BSL78_05049
RuvB-like helicase; Belongs to the RuvB family.
    
 0.957
BSL78_20061
Putative vacuolar protein sorting-associated protein 72-like.
    
 0.952
BSL78_20289
Histone H2A; Belongs to the histone H2A family.
    
 0.945
BSL78_12945
Putative DNA methyltransferase 1-associated protein 1.
    
 0.893
BSL78_05424
Putative DNA methyltransferase 1-associated protein 1.
    
 0.893
BSL78_08092
RuvB-like helicase.
    
 0.887
BSL78_08093
RuvB-like helicase.
    
 0.887
BSL78_23270
Putative actin-like protein 6A; Belongs to the actin family.
    
 0.882
BSL78_20004
Putative actin-like protein 6B; Belongs to the actin family.
    
 0.882
BSL78_14224
Putative AT-rich interactive domain-containing protein 4B-like isoform X2.
    
 0.864
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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