STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_16574Uncharacterized protein. (209 aa)    
Predicted Functional Partners:
BSL78_07938
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.689
BSL78_16826
Putative BRISC and BRCA1-A complex member 1.
    
  0.512
BSL78_10794
Putative 60S ribosomal protein L21.
   
   0.472
BSL78_12792
Putative LYR motif-containing protein 4 isoform X2; Belongs to the complex I LYR family.
    
 0.430
BSL78_21178
Putative mitochondrial import receptor subunit TOM40-like isoform X1.
    
  0.420
BSL78_00245
Putative 39S ribosomal protein L2, mitochondrial.
   
 
 0.420
BSL78_06082
Putative 60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.408
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.