STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_16395DUF4210 domain-containing protein. (883 aa)    
Predicted Functional Partners:
BSL78_15558
Putative AN1-type zinc finger protein 2B-like isoform X1.
      
 0.565
BSL78_01783
Putative ribosome biogenesis protein RLP24.
      
 0.555
BSL78_09925
Onecut/Hnf6.
      
 0.552
BSL78_13055
Putative GPI ethanolamine phosphate transferase 3.
      
 0.499
BSL78_17141
AP4E_app_platf domain-containing protein.
      
 0.469
BSL78_16075
Putative AN1-type zinc finger protein 1.
      
 0.465
BSL78_00865
Putative WD repeat-containing protein 7 isoform X3.
      
 0.463
BSL78_00866
Putative WD repeat-containing protein 7 isoform X3.
      
 0.463
BSL78_19883
Putative LMBR1 domain-containing protein 2.
      
 0.461
BSL78_08364
Putative LMBR1 domain-containing protein 2.
      
 0.461
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.