STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_16095Putative E3 ubiquitin-protein ligase RNF38 isoform X2. (177 aa)    
Predicted Functional Partners:
BSL78_05430
Ubuiquitin/ribosomal L40 fusion protein.
    
 0.946
BSL78_11415
Putative ubiquitin/40S ribosomal protein RPS27A fusion protein.
    
 0.934
BSL78_10445
Polyubiquitin.
    
 0.878
BSL78_17761
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.824
BSL78_28448
Polyubiquitin.
    
  0.785
BSL78_28447
Putative polyubiquitin-C isoform X3.
    
  0.785
BSL78_28446
Ubiquitin.
    
  0.785
BSL78_17583
Ubiquitin.
    
  0.785
BSL78_16958
Putative polyubiquitin-C-like isoform X1.
    
  0.785
BSL78_02992
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.785
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.