STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_13445Putative formin-like protein 3. (634 aa)    
Predicted Functional Partners:
BSL78_12452
Uncharacterized protein.
    
 0.887
BSL78_08630
Rho1.
   
 0.761
BSL78_08631
Putative transforming protein RhoA-like.
   
 0.761
BSL78_30065
Uncharacterized protein.
   
 0.749
BSL78_25453
Uncharacterized protein.
   
 0.749
BSL78_17281
Putative ras-related C3 botulinum toxin substrate 1-like.
   
 0.749
BSL78_12453
Cdc42.
   
 0.749
BSL78_09559
Putative cell division control protein 42-like.
   
 0.749
BSL78_05888
Chain A, Rac1 P29s Mutant.
   
 0.749
BSL78_05889
Putative ras-related C3 botulinum toxin substrate 1.
   
 0.749
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.