STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_12800Putative trimethyllysine dioxygenase, mitochondrial isoform X1. (411 aa)    
Predicted Functional Partners:
BSL78_05772
Aldehyde dehydrogenase 7A1.
   
 0.725
BSL78_05771
Aldehyde dehydrogenase 7A1.
   
 0.725
BSL78_07321
Putative thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3 isoform X1.
     
 0.699
BSL78_07278
Putative gamma-butyrobetaine dioxygenase-like.
  
  
0.689
BSL78_20930
Uncharacterized protein.
  
  
0.687
BSL78_09420
Putative gamma-butyrobetaine dioxygenase isoform X2.
  
  
0.684
BSL78_22489
Putative gamma-butyrobetaine dioxygenase-like isoform X2.
  
  
0.683
BSL78_20325
TauD domain-containing protein.
  
  
 0.677
BSL78_22233
Uncharacterized protein.
  
  
0.674
BSL78_20010
Putative gamma-butyrobetaine dioxygenase-like isoform X2.
  
  
0.672
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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