STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_12334Putative matrix metalloproteinase-19. (255 aa)    
Predicted Functional Partners:
BSL78_09510
Putative metalloproteinase inhibitor 1.
    
 0.782
BSL78_09177
NTR domain-containing protein.
    
 0.782
BSL78_10108
Tensilin.
    
 0.732
BSL78_12335
Putative collagenase 3-like.
  
  0.656
BSL78_14975
Putative matrilysin isoform X2.
  
  0.642
BSL78_14974
Putative matrilysin isoform X2.
  
  0.641
BSL78_28151
Uncharacterized protein.
    
 0.570
BSL78_09508
Putative metalloproteinase inhibitor 1-like.
    
 0.570
BSL78_09779
Syndecan.
    
 0.547
BSL78_10338
Putative cytochrome b-245 light chain-like.
     
 0.541
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.