STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_12301Putative RNA-directed DNA polymerase from mobile element jockey-like. (407 aa)    
Predicted Functional Partners:
BSL78_07938
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.689
BSL78_22685
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_22686
Integrin beta.
    
  0.539
BSL78_13567
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_13568
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_12598
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_12591
Integrin beta.
    
  0.539
BSL78_01722
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_00619
Integrin beta; Belongs to the integrin beta chain family.
    
  0.539
BSL78_16826
Putative BRISC and BRCA1-A complex member 1.
    
  0.512
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.