STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_11301SH3 domain-containing protein. (560 aa)    
Predicted Functional Partners:
BSL78_17099
Ras-related protein Rab-11B.
   
 0.798
BSL78_27114
Putative Golgi SNAP receptor complex member 1 isoform X4.
   
 0.789
BSL78_06018
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.785
BSL78_05265
Putative actin-related protein 3; Belongs to the actin family.
   
 0.733
BSL78_15388
Roc domain-containing protein.
    
 0.731
BSL78_15389
Protein kinase domain-containing protein.
    
 0.731
BSL78_15387
Uncharacterized protein.
    
 0.731
BSL78_00521
Putative general vesicular transport factor.
   
 0.723
BSL78_02240
Putative golgin subfamily A member 2.
   
 
 0.708
BSL78_23077
Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament.
   
 0.702
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.