STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_07507Putative transmembrane and ubiquitin-like domain-containing protein 1. (291 aa)    
Predicted Functional Partners:
BSL78_24308
Putative serine/threonine-protein kinase 4 isoform X3.
    
 0.674
BSL78_18625
Putative erlin-1-like isoform X2.
    
 
 0.628
BSL78_04561
Putative alpha-actinin, sarcomeric-like.
   
 
 0.578
BSL78_23549
Putative myosin-2 essential light chain-like isoform X2.
   
  
 0.561
BSL78_15017
Putative myosin-2 essential light chain-like isoform X1.
   
  
 0.561
BSL78_21634
RING-type domain-containing protein.
    
 
 0.517
BSL78_23591
RING-type domain-containing protein.
    
 
 0.498
BSL78_13453
Forkhead transcription factor C.
      
 0.472
BSL78_04784
Putative large proline-rich protein BAG6-like.
      
 0.463
BSL78_09587
Putative 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X3.
      
 0.416
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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