STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_07300Endo/exonuclease/phosphatase domain-containing protein. (407 aa)    
Predicted Functional Partners:
BSL78_16826
Putative BRISC and BRCA1-A complex member 1.
    
 0.886
BSL78_23345
Putative BRCA1-A complex subunit BRE.
    
 0.871
BSL78_05349
Putative lys-63-specific deubiquitinase BRCC36 isoform X2.
    
 0.871
BSL78_05430
Ubuiquitin/ribosomal L40 fusion protein.
    
  0.718
BSL78_11415
Putative ubiquitin/40S ribosomal protein RPS27A fusion protein.
    
  0.709
BSL78_10445
Polyubiquitin.
    
  0.709
BSL78_07938
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.689
BSL78_25847
Small ubiquitin-related modifier 3.
    
 0.615
BSL78_06061
Putative small ubiquitin-related modifier 1-like.
    
 0.615
BSL78_02992
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.561
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.