STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_07069Putative ATP-dependent RNA helicase DDX28. (279 aa)    
Predicted Functional Partners:
BSL78_18013
Putative something about silencing protein 10 isoform X2.
   
  0.937
BSL78_14776
Putative something about silencing protein 10 isoform X1.
   
  0.937
BSL78_02902
Putative ESF1-like isoform X3.
   
 
 0.919
BSL78_19597
Putative neuroguidin isoform X2.
   
 0.912
BSL78_04986
Putative neuroguidin isoform X2.
   
 0.912
BSL78_13501
Putative ATP-dependent RNA helicase DDX52.
  
 0.892
BSL78_13502
Putative ATP-dependent RNA helicase DDX52.
  
 0.875
BSL78_09408
Putative rRNA-processing protein EBP2.
   
 0.873
BSL78_08124
Putative nucleolar protein 14.
   
 0.857
BSL78_29683
Putative WD repeat-containing protein 46 isoform X1.
   
 0.842
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.