STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_06134Uncharacterized protein. (338 aa)    
Predicted Functional Partners:
BSL78_07225
Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.943
BSL78_06826
ANK_REP_REGION domain-containing protein.
   
 0.939
BSL78_00338
Putative methyltransferase BTM2-like.
    
 0.936
BSL78_26933
Putative cleavage and polyadenylation specificity factor subunit 3.
   
 0.933
BSL78_15388
Roc domain-containing protein.
   
 0.930
BSL78_15389
Protein kinase domain-containing protein.
   
 0.930
BSL78_15387
Uncharacterized protein.
   
 0.930
BSL78_10987
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.929
BSL78_07226
Putative pre-mRNA 3' end processing protein WDR33 isoform X1.
    
 0.927
eif2
Putative eukaryotic translation initiation factor 2 subunit 1.
   
 0.923
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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