STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_04402Putative NLR family CARD domain-containing protein 4. (667 aa)    
Predicted Functional Partners:
BSL78_15388
Roc domain-containing protein.
    
  0.722
BSL78_15389
Protein kinase domain-containing protein.
    
  0.722
BSL78_15387
Uncharacterized protein.
    
  0.722
BSL78_08310
Putative E3 SUMO-protein ligase RanBP2.
   
 
  0.538
BSL78_00161
Serine/threonine-protein kinase Nek7; Belongs to the protein kinase superfamily.
    
  0.471
BSL78_21581
Putative suppressor of G2 allele of SKP1-like.
    
  0.459
BSL78_09547
Putative autophagy-related protein 16 isoform X2.
    
 0.458
BSL78_10835
Putative ankyrin repeat family A protein 2.
    
  0.454
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.