STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_04274Paired mesoderm homeobox. (883 aa)    
Predicted Functional Partners:
BSL78_23131
Putative LIM domain-binding protein 2 isoform X4.
    
 0.757
BSL78_10995
Putative serum response factor-like isoform X3.
    
 0.684
BSL78_13819
Engrailed.
    
 0.602
BSL78_13818
Homeobox protein engrailed.
    
 0.602
BSL78_27269
Putative adenylate kinase 9.
    
  0.590
BSL78_27271
Putative adenylate kinase 9 isoform X7.
    
  0.590
BSL78_27268
Putative adenylate kinase 9.
    
  0.590
BSL78_27270
Putative adenylate kinase 9 isoform X2.
    
  0.590
BSL78_14370
Putative helix-loop-helix protein 1.
   
 0.553
BSL78_08744
Putative transcription factor 12 isoform X7.
    
 0.545
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.