STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_03903Putative histone-lysine N-methyltransferase CG1716-like. (2514 aa)    
Predicted Functional Partners:
BSL78_11944
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.985
BSL78_10864
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.971
BSL78_02564
Uncharacterized protein.
   
 
 0.971
BSL78_04352
Putative DNA-directed RNA polymerase II subunit RPB3-like.
    
 
 0.970
BSL78_14036
Histone H3; Belongs to the histone H3 family.
   
 0.966
BSL78_13356
Histone domain-containing protein.
   
 0.966
BSL78_11943
Histone domain-containing protein.
   
 0.966
BSL78_11948
Histone domain-containing protein.
   
 0.966
BSL78_05562
H3 histone.
   
 0.966
BSL78_20289
Histone H2A; Belongs to the histone H2A family.
    
 0.957
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.