STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_03572Putative zinc finger CCCH-type containing 15. (490 aa)    
Predicted Functional Partners:
BSL78_18562
Putative developmentally-regulated GTP-binding protein 1-like isoform X2.
   
 
 0.984
BSL78_09333
Putative developmentally-regulated GTP-binding protein 1-like isoform X2.
   
 
 0.984
BSL78_25957
Uncharacterized protein.
   
 
 0.948
BSL78_08463
Putative developmentally-regulated GTP-binding protein 2 isoform X3.
   
 
 0.948
BSL78_07938
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
   0.948
BSL78_03812
Putative 40S ribosomal protein S15-like; Belongs to the universal ribosomal protein uS19 family.
   
   0.944
BSL78_21101
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
   0.941
BSL78_23675
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.939
BSL78_14927
Putative 40S ribosomal protein S20.
   
   0.903
BSL78_22134
Putative 60S ribosomal protein L5-like.
   
   0.896
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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