STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_03195Netrin receptor Unc-5v1. (840 aa)    
Predicted Functional Partners:
BSL78_19854
Putative netrin-1 isoform X3.
    
 0.953
BSL78_30202
Putative tyrosine-protein phosphatase corkscrew.
    
 0.834
BSL78_07231
Putative tyrosine-protein phosphatase corkscrew.
    
 0.817
BSL78_28107
Pkinase_Tyr domain-containing protein.
    
 0.787
BSL78_03119
Focal adhesion kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.787
BSL78_02125
Uncharacterized protein.
    
  0.767
BSL78_28029
Putative neogenin.
    
 0.752
BSL78_27044
Putative neogenin-like.
    
 0.752
BSL78_21048
Neogenin/DCC.
    
 0.752
BSL78_19529
Putative protogenin.
    
 0.752
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.