STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_02835Putative complex III assembly factor LYRM7-like; Belongs to the complex I LYR family. (101 aa)    
Predicted Functional Partners:
BSL78_18057
Putative UBX domain-containing protein 7-like isoform X1.
    
   0.959
BSL78_09198
Putative 39S ribosomal protein L3, mitochondrial-like; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.950
BSL78_21245
Putative 39S ribosomal protein L22, mitochondrial.
   
 
 0.948
BSL78_04981
Putative 39S ribosomal protein L4, mitochondrial isoform X1.
   
 
 0.943
BSL78_02318
Putative 39S ribosomal protein L40, mitochondrial-like.
   
 
 0.943
BSL78_10725
Putative 39S ribosomal protein L43, mitochondrial.
   
   0.942
BSL78_00245
Putative 39S ribosomal protein L2, mitochondrial.
    
 
 0.942
BSL78_14623
Putative 39S ribosomal protein L32, mitochondrial.
   
 
 0.940
BSL78_22088
Putative 39S ribosomal protein L13, mitochondrial-like.
   
   0.937
BSL78_07944
Putative 39S ribosomal protein L49, mitochondrial.
   
   0.934
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.