BSL78_01574 protein (Apostichopus japonicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BSL78_01574

Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like. (432 aa)

Predicted Functional Partners:

BSL78_22381

0.898

BSL78_01557

0.898

BSL78_27812

0.816

BSL78_29980

0.733

BSL78_28533

0.733

BSL78_27882

0.733

BSL78_05915

0.733

BSL78_06063

0.726

BSL78_07043

0.722

BSL78_23728

0.703

Your Current Organism:

Apostichopus japonicus

NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BSL78_01557	BSL78_01574	A0A2G8LMT7	A0A2G8LMH8	Putative TATA-box-binding protein-like.	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	0.898
BSL78_01557	BSL78_05915	A0A2G8LMT7	A0A2G8LA76	Putative TATA-box-binding protein-like.	Putative TATA box-binding protein-associated factor RNA polymerase I subunit C.	0.760
BSL78_01557	BSL78_06063	A0A2G8LMT7	A0A2G8L9U4	Putative TATA-box-binding protein-like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.825
BSL78_01557	BSL78_07043	A0A2G8LMT7	A0A2G8L745	Putative TATA-box-binding protein-like.	Putative DNA-directed RNA polymerase I subunit RPA34.	0.601
BSL78_01557	BSL78_23728	A0A2G8LMT7	A0A2G8JUL4	Putative TATA-box-binding protein-like.	Putative nucleolar transcription factor 1-A isoform X3.	0.751
BSL78_01557	BSL78_27812	A0A2G8LMT7	A0A2G8JI10	Putative TATA-box-binding protein-like.	Putative RNA polymerase I-specific transcription initiation factor RRN3.	0.871
BSL78_01557	BSL78_27882	A0A2G8LMT7	A0A2G8JHU5	Putative TATA-box-binding protein-like.	Putative TATA box-binding protein-associated factor RNA polymerase I subunit C.	0.760
BSL78_01557	BSL78_28533	A0A2G8LMT7	A0A2G8JFV9	Putative TATA-box-binding protein-like.	Putative histidine triad nucleotide-binding protein 1.	0.760
BSL78_01557	BSL78_29980	A0A2G8LMT7	A0A2G8JBT4	Putative TATA-box-binding protein-like.	Putative histidine triad nucleotide-binding protein 1.	0.760
BSL78_01574	BSL78_01557	A0A2G8LMH8	A0A2G8LMT7	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative TATA-box-binding protein-like.	0.898
BSL78_01574	BSL78_05915	A0A2G8LMH8	A0A2G8LA76	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative TATA box-binding protein-associated factor RNA polymerase I subunit C.	0.733
BSL78_01574	BSL78_06063	A0A2G8LMH8	A0A2G8L9U4	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.726
BSL78_01574	BSL78_07043	A0A2G8LMH8	A0A2G8L745	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative DNA-directed RNA polymerase I subunit RPA34.	0.722
BSL78_01574	BSL78_22381	A0A2G8LMH8	A0A2G8JYF4	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	TATA box binding protein (TBP)-associated factor.	0.898
BSL78_01574	BSL78_23728	A0A2G8LMH8	A0A2G8JUL4	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative nucleolar transcription factor 1-A isoform X3.	0.703
BSL78_01574	BSL78_27812	A0A2G8LMH8	A0A2G8JI10	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative RNA polymerase I-specific transcription initiation factor RRN3.	0.816
BSL78_01574	BSL78_27882	A0A2G8LMH8	A0A2G8JHU5	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative TATA box-binding protein-associated factor RNA polymerase I subunit C.	0.733
BSL78_01574	BSL78_28533	A0A2G8LMH8	A0A2G8JFV9	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative histidine triad nucleotide-binding protein 1.	0.733
BSL78_01574	BSL78_29980	A0A2G8LMH8	A0A2G8JBT4	Putative TATA box-binding protein-associated factor RNA polymerase I subunit A-like.	Putative histidine triad nucleotide-binding protein 1.	0.733
BSL78_05915	BSL78_01557	A0A2G8LA76	A0A2G8LMT7	Putative TATA box-binding protein-associated factor RNA polymerase I subunit C.	Putative TATA-box-binding protein-like.	0.760