STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_01516Putative ribosome-binding factor A, mitochondrial. (279 aa)    
Predicted Functional Partners:
BSL78_14763
Putative methyltransferase-like protein 15.
    
 
 0.955
BSL78_19176
Putative 28S ribosomal protein S21, mitochondrial.
   
   0.950
BSL78_21023
Uncharacterized protein.
    
   0.943
BSL78_15020
Putative translation initiation factor IF-3, mitochondrial.
   
 
 0.912
BSL78_19449
Uncharacterized protein.
    
   0.886
BSL78_10181
Putative 28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
    
 
 0.885
BSL78_07038
Putative 28S ribosomal protein S33, mitochondrial-like.
   
   0.880
BSL78_12000
Putative 28S ribosomal protein S27, mitochondrial.
   
   0.876
BSL78_07631
Putative 28S ribosomal protein S18c, mitochondrial.
   
   0.876
BSL78_04224
Putative 28S ribosomal protein S22, mitochondrial.
    
 
 0.875
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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