STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_00702Putative craniofacial development protein 2-like. (235 aa)    
Predicted Functional Partners:
BSL78_07938
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.689
BSL78_16826
Putative BRISC and BRCA1-A complex member 1.
    
  0.512
BSL78_27833
Putative craniofacial development protein 2-like.
  
     0.510
BSL78_10794
Putative 60S ribosomal protein L21.
   
   0.472
BSL78_22027
Reverse transcriptase domain-containing protein.
  
     0.460
BSL78_27493
Endonuclease-reverse transcriptase.
  
     0.449
BSL78_11909
Reverse transcriptase domain-containing protein.
  
     0.447
BSL78_20130
Uncharacterized protein.
 
     0.443
BSL78_23032
Reverse transcriptase domain-containing protein.
 
     0.431
BSL78_07801
Endonuclease-reverse transcriptase.
  
     0.431
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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