STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_00464Putative serine/threonine-protein kinase SMG1. (737 aa)    
Predicted Functional Partners:
BSL78_00465
Putative serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
 
     0.941
BSL78_00463
Putative serine/threonine-protein kinase SMG1.
 
     0.940
BSL78_28399
Putative serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
 
     0.933
BSL78_13646
Putative target of rapamycin complex subunit lst8.
    
 0.925
BSL78_25686
Putative target of rapamycin complex 2 subunit MAPKAP1.
    
 0.895
BSL78_22263
Putative ras-related GTP-binding protein A-like.
    
 0.895
BSL78_17326
Uncharacterized protein.
   
 0.873
BSL78_16641
Uncharacterized protein.
   
 0.873
BSL78_13751
Uncharacterized protein.
   
 0.872
BSL78_20420
Putative nonsense-mediated mRNA decay protein.
    
 0.870
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.