STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1789 aa)    
Predicted Functional Partners:
CPSF1
Cleavage and polyadenylation specific factor 1.
    
 0.999
CPSF2
Cleavage and polyadenylation specific factor 2.
    
 0.999
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.999
SYMPK
Symplekin.
    
 0.997
WDR82
WD repeat domain 82.
    
 0.997
CSTF2
Cleavage stimulation factor subunit 2.
    
 0.995
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.992
CPSF4L
Cleavage and polyadenylation specific factor 4 like.
    
 0.987
CPSF4
Cleavage and polyadenylation specific factor 4.
    
 0.987
UBE3D
Ubiquitin protein ligase E3D.
    
 0.986
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.