STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP30Ubiquitin specific peptidase 30. (481 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.982
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.974
UBC
Ubiquitin C.
    
 0.973
TAF9
TATA-box binding protein associated factor 9b.
    
 0.904
TADA3
Transcriptional adaptor 3.
    
 0.897
ENY2
ENY2 transcription and export complex 2 subunit.
    
 0.897
TRRAP
Transformation/transcription domain associated protein.
    
 0.897
TAF6L
TATA-box binding protein associated factor 6 like.
    
 0.886
TAF12
TATA-box binding protein associated factor 12.
    
 0.885
ENSARWP00000001035
annotation not available
    
 0.882
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.