STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112967990Zinc finger BED domain-containing protein 1-like. (729 aa)    
Predicted Functional Partners:
UBE2I
Ubiquitin conjugating enzyme E2 I.
    
  0.542
ENSARWP00000010706
annotation not available
    
  0.509
ASMTL
Acetylserotonin O-methyltransferase like.
   
 
 0.492
CHD4
Chromodomain helicase DNA binding protein 4.
    
 0.445
CHD5
Chromodomain helicase DNA binding protein 5.
    
 0.445
ENSARWP00000012592
annotation not available
    
 0.445
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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