STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP39Ubiquitin specific peptidase 39. (549 aa)    
Predicted Functional Partners:
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.997
PRPF8
pre-mRNA processing factor 8.
   
 0.995
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.994
PRPF31
pre-mRNA processing factor 31.
    
 0.994
DDX23
DEAD-box helicase 23.
   
 0.992
PRPF4
pre-mRNA processing factor 4.
    
 0.990
PRPF3
pre-mRNA processing factor 3.
   
 0.988
SNRNP27
Small nuclear ribonucleoprotein U4/U6.U5 subunit 27.
   
 0.987
PRPF6
pre-mRNA processing factor 6.
    
 0.985
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
    
 0.982
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.