STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIG1DNA ligase 1. (981 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen.
   
 0.999
APEX1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
  
 
 0.992
FEN1
Flap structure-specific endonuclease 1.
  
 0.992
RFC4
Replication factor C subunit 4.
   
 0.968
XRCC5
X-ray repair cross complementing 5.
   
 0.961
XRCC1
X-ray repair cross complementing 1.
   
 0.954
XRCC6
X-ray repair cross complementing 6.
   
 0.950
MCM5
Minichromosome maintenance complex component 5.
   
  
 0.949
POLE
DNA polymerase epsilon, catalytic subunit.
   
 0.930
TRAF6
TNF receptor associated factor 6.
    
 0.914
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.