STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HECTD1HECT domain E3 ubiquitin protein ligase 1. (2571 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
  
0.883
UBR3
Ubiquitin protein ligase E3 component n-recognin 3.
   
  
 0.730
UBA3
Ubiquitin like modifier activating enzyme 3.
     
 0.631
BIRC6
Baculoviral IAP repeat containing 6.
   
 
 0.567
ENSARWP00000021599
annotation not available
   
  
 0.534
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.525
ZRANB1
Zinc finger RANBP2-type containing 1.
    
 
 0.522
UBR2
Ubiquitin protein ligase E3 component n-recognin 2.
   
  
 0.496
APC2
APC regulator of WNT signaling pathway 2.
  
 
 0.466
USP9X
Ubiquitin specific peptidase 9 X-linked.
   
   0.461
Your Current Organism:
Apteryx rowi
NCBI taxonomy Id: 308060
Other names: A. rowi, Apteryx australis rowii, Apteryx rowii, Okarito brown kiwi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.