ARAM_000473 protein (Aspergillus rambellii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARAM_000473

Acetamidase. (541 aa)

Predicted Functional Partners:

ARAM_003047

0.925

ARAM_002288

0.879

ARAM_001066

0.812

ARAM_004985

0.664

ARAM_004795

0.664

ARAM_002349

0.664

ARAM_001994

0.616

ARAM_001062

0.613

ARAM_005488

0.613

ARAM_000023

0.613

Your Current Organism:

Aspergillus rambellii

NCBI taxonomy Id: 308745
Other names: A. rambellii, ATCC 42001, CBS 101887, IBT 14580

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARAM_000023	ARAM_000473	A0A0F8V5P4	A0A0F8VRK1	Uncharacterized protein.	Acetamidase.	0.613
ARAM_000023	ARAM_001062	A0A0F8V5P4	A0A0F8V0B7	Uncharacterized protein.	Uncharacterized protein.	0.913
ARAM_000023	ARAM_001066	A0A0F8V5P4	A0A0F8X1K6	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.661
ARAM_000023	ARAM_001994	A0A0F8V5P4	A0A0F8WPW2	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.422
ARAM_000023	ARAM_005488	A0A0F8V5P4	A0A0F8V0S7	Uncharacterized protein.	Carbamoyl-phosphate synthase, small subunit.	0.998
ARAM_000473	ARAM_000023	A0A0F8VRK1	A0A0F8V5P4	Acetamidase.	Uncharacterized protein.	0.613
ARAM_000473	ARAM_001062	A0A0F8VRK1	A0A0F8V0B7	Acetamidase.	Uncharacterized protein.	0.613
ARAM_000473	ARAM_001066	A0A0F8VRK1	A0A0F8X1K6	Acetamidase.	AA_TRNA_LIGASE_II domain-containing protein.	0.812
ARAM_000473	ARAM_001994	A0A0F8VRK1	A0A0F8WPW2	Acetamidase.	Glutamine amidotransferase type-1 domain-containing protein.	0.616
ARAM_000473	ARAM_002288	A0A0F8VRK1	A0A0F8V6B8	Acetamidase.	CN hydrolase domain-containing protein.	0.879
ARAM_000473	ARAM_002349	A0A0F8VRK1	A0A0F8VMZ9	Acetamidase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.664
ARAM_000473	ARAM_003047	A0A0F8VRK1	A0A0F8X9Q8	Acetamidase.	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	0.925
ARAM_000473	ARAM_004795	A0A0F8VRK1	A0A0F8U5A9	Acetamidase.	Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.664
ARAM_000473	ARAM_004985	A0A0F8VRK1	A0A0F8TWV6	Acetamidase.	Glutamyl-tRNA synthetase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.664
ARAM_000473	ARAM_005488	A0A0F8VRK1	A0A0F8V0S7	Acetamidase.	Carbamoyl-phosphate synthase, small subunit.	0.613
ARAM_001062	ARAM_000023	A0A0F8V0B7	A0A0F8V5P4	Uncharacterized protein.	Uncharacterized protein.	0.913
ARAM_001062	ARAM_000473	A0A0F8V0B7	A0A0F8VRK1	Uncharacterized protein.	Acetamidase.	0.613
ARAM_001062	ARAM_001066	A0A0F8V0B7	A0A0F8X1K6	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.661
ARAM_001062	ARAM_001994	A0A0F8V0B7	A0A0F8WPW2	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.422
ARAM_001062	ARAM_005488	A0A0F8V0B7	A0A0F8V0S7	Uncharacterized protein.	Carbamoyl-phosphate synthase, small subunit.	0.950