STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARC88571.1Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
ARC88570.1
A alpha-helical domain with a conserved ER moti; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.965
ARC88569.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.958
ARC88572.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.934
ARC88196.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
ARC88568.1
Uracil permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
ARC88565.1
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
uvrB
Phenazine biosynthesis protein PhzF family; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subu [...]
    
  0.401
Your Current Organism:
Rhodovulum sp. MB263
NCBI taxonomy Id: 308754
Other names: R. sp. MB263
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.