STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A383VGK6Helicase C-terminal domain-containing protein. (1191 aa)    
Predicted Functional Partners:
A0A383WGI0
EF-hand domain-containing protein.
   
 
 0.824
A0A383W6D8
Uncharacterized protein.
    
 0.774
A0A383VLR0
Uncharacterized protein.
   
 0.722
A0A383WNF7
ARID domain-containing protein.
   
 0.722
A0A383WD69
Histone H2A; Belongs to the histone H2A family.
    
 0.656
A0A383V5T7
Uncharacterized protein.
    
 0.582
A0A383VCV2
RuvB-like helicase; Belongs to the RuvB family.
    
 0.551
A0A383WN36
SF3b1 domain-containing protein.
   
  0.544
A0A383W7U7
Uncharacterized protein.
   
   0.537
A0A383VGK4
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.529
Your Current Organism:
Tetradesmus obliquus
NCBI taxonomy Id: 3088
Other names: Achnanthes obliqua, Acutodesmus obliquus, Acutodesmus obliquus (Turpin) Hegewald & Hanagata, 2000, Scenedesmus obliquus, T. obliquus, Tetradesmus obliquus (Turpin) M.J.Wynne, 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.