STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A383VVN0Uncharacterized protein. (939 aa)    
Predicted Functional Partners:
A0A383W783
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
 
 0.909
A0A383VWW5
zf-C2HE domain-containing protein.
    
 
 0.877
A0A383W4K1
DNA_LIGASE_A3 domain-containing protein.
   
 0.823
A0A383WJP1
SAP domain-containing protein.
     
 0.802
A0A383W5C1
Ku domain-containing protein.
    
 0.800
A0A383VQE5
WLM domain-containing protein.
    
 
 0.780
A0A383W6D8
Uncharacterized protein.
   
 
 0.765
A0A383VDC9
PPIase cyclophilin-type domain-containing protein.
   
 
 0.727
A0A383WLY8
Uncharacterized protein.
    
 
 0.708
A0A383VSZ3
BRCT domain-containing protein.
   
 
 0.655
Your Current Organism:
Tetradesmus obliquus
NCBI taxonomy Id: 3088
Other names: Achnanthes obliqua, Acutodesmus obliquus, Acutodesmus obliquus (Turpin) Hegewald & Hanagata, 2000, Scenedesmus obliquus, T. obliquus, Tetradesmus obliquus (Turpin) M.J.Wynne, 2016
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