STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A383WF46RBR-type E3 ubiquitin transferase. (878 aa)    
Predicted Functional Partners:
A0A383VV61
Tr-type G domain-containing protein.
   
 
 0.588
A0A383VVA2
Uncharacterized protein.
     
 0.526
A0A383VB24
RBR-type E3 ubiquitin transferase.
     
 0.472
A0A383VDJ0
RBR-type E3 ubiquitin transferase.
     
 0.472
A0A383VNL1
RBR-type E3 ubiquitin transferase.
     
0.472
A0A383VYW5
DLH domain-containing protein.
     
 0.472
A0A383VIP1
eRF1_1 domain-containing protein.
    
 
 0.471
A0A383WCS5
Uncharacterized protein.
   
 
  0.422
A0A383WDG2
Uncharacterized protein.
   
 
  0.422
A0A383VMQ1
E2_bind domain-containing protein.
   
 
  0.417
Your Current Organism:
Tetradesmus obliquus
NCBI taxonomy Id: 3088
Other names: Achnanthes obliqua, Acutodesmus obliquus, Acutodesmus obliquus (Turpin) Hegewald & Hanagata, 2000, Scenedesmus obliquus, T. obliquus, Tetradesmus obliquus (Turpin) M.J.Wynne, 2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.