STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A383WHR9General transcription factor IIH subunit. (529 aa)    
Predicted Functional Partners:
A0A383VBA4
Uncharacterized protein.
   
 0.999
A0A383VZ16
BSD domain-containing protein.
    
 0.999
A0A383W7J1
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.999
A0A383WM71
Helicase ATP-binding domain-containing protein.
    
 0.999
A0A383WPN6
Uncharacterized protein.
    
 0.999
A0A383VE14
MAT1 domain-containing protein.
   
 0.991
A0A383V3F3
Uncharacterized protein.
   
 0.984
A0A383VM84
TFIIE domain-containing protein.
   
 0.984
A0A383V6M1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.971
A0A383WG97
TFIIB-type domain-containing protein.
    
 0.971
Your Current Organism:
Tetradesmus obliquus
NCBI taxonomy Id: 3088
Other names: Achnanthes obliqua, Acutodesmus obliquus, Acutodesmus obliquus (Turpin) Hegewald & Hanagata, 2000, Scenedesmus obliquus, T. obliquus, Tetradesmus obliquus (Turpin) M.J.Wynne, 2016
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