Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIR62275.1 | SIR62290.1 | SAMN05421752_101318 | SAMN05421752_101319 | Putative ATP-dependent DNA ligase. | Hypothetical protein. | 0.523 |
SIR62275.1 | SIR62303.1 | SAMN05421752_101318 | SAMN05421752_101320 | Putative ATP-dependent DNA ligase. | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | 0.858 |
SIR62275.1 | SIR72465.1 | SAMN05421752_101318 | SAMN05421752_10286 | Putative ATP-dependent DNA ligase. | Regulatory protein, arsR family. | 0.429 |
SIR62275.1 | SIR81306.1 | SAMN05421752_101318 | SAMN05421752_10368 | Putative ATP-dependent DNA ligase. | Hypothetical protein. | 0.474 |
SIR62275.1 | SIR88279.1 | SAMN05421752_101318 | SAMN05421752_104168 | Putative ATP-dependent DNA ligase. | TIGR00288 family protein. | 0.606 |
SIR62275.1 | SIS06952.1 | SAMN05421752_101318 | SAMN05421752_109166 | Putative ATP-dependent DNA ligase. | Predicted RNA-binding protein, contains TRAM domain. | 0.439 |
SIR62275.1 | SIS13474.1 | SAMN05421752_101318 | SAMN05421752_11351 | Putative ATP-dependent DNA ligase. | Predicted transcriptional regulator. | 0.449 |
SIR62275.1 | hjc | SAMN05421752_101318 | SAMN05421752_10554 | Putative ATP-dependent DNA ligase. | Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. | 0.477 |
SIR62275.1 | purO | SAMN05421752_101318 | SAMN05421752_105225 | Putative ATP-dependent DNA ligase. | IMP cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP. | 0.429 |
SIR62275.1 | rnp3 | SAMN05421752_101318 | SAMN05421752_103175 | Putative ATP-dependent DNA ligase. | Ribonuclease P/MRP protein subunit RPP1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.455 |
SIR62290.1 | SIR62275.1 | SAMN05421752_101319 | SAMN05421752_101318 | Hypothetical protein. | Putative ATP-dependent DNA ligase. | 0.523 |
SIR62290.1 | SIR62303.1 | SAMN05421752_101319 | SAMN05421752_101320 | Hypothetical protein. | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | 0.474 |
SIR62303.1 | SIR62275.1 | SAMN05421752_101320 | SAMN05421752_101318 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Putative ATP-dependent DNA ligase. | 0.858 |
SIR62303.1 | SIR62290.1 | SAMN05421752_101320 | SAMN05421752_101319 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Hypothetical protein. | 0.474 |
SIR62303.1 | SIR88279.1 | SAMN05421752_101320 | SAMN05421752_104168 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | TIGR00288 family protein. | 0.605 |
SIR62303.1 | SIS06952.1 | SAMN05421752_101320 | SAMN05421752_109166 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Predicted RNA-binding protein, contains TRAM domain. | 0.470 |
SIR62303.1 | SIS13474.1 | SAMN05421752_101320 | SAMN05421752_11351 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Predicted transcriptional regulator. | 0.503 |
SIR62303.1 | hjc | SAMN05421752_101320 | SAMN05421752_10554 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family. | 0.435 |
SIR62303.1 | rnp3 | SAMN05421752_101320 | SAMN05421752_103175 | Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | Ribonuclease P/MRP protein subunit RPP1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. | 0.616 |
SIR72465.1 | SIR62275.1 | SAMN05421752_10286 | SAMN05421752_101318 | Regulatory protein, arsR family. | Putative ATP-dependent DNA ligase. | 0.429 |
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