rps15 protein (Natronorubrum thiooxidans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rps15

Small subunit ribosomal protein S15. (155 aa)

Predicted Functional Partners:

rpl15e

0.999

rps13

0.999

rps4

0.999

rps11

0.999

rpoD

0.999

rpl18e

0.999

rpl13

0.999

rps9

0.999

rps2

0.999

rpl7ae

0.999

Your Current Organism:

Natronorubrum thiooxidans

NCBI taxonomy Id: 308853

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl13	rpl15e	SAMN05421752_101163	SAMN05421752_101104	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
rpl13	rpl18e	SAMN05421752_101163	SAMN05421752_101162	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Large subunit ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.999
rpl13	rpl7ae	SAMN05421752_101163	SAMN05421752_101184	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.999
rpl13	rpoD	SAMN05421752_101163	SAMN05421752_101160	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.	0.998
rpl13	rps11	SAMN05421752_101163	SAMN05421752_101159	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.	0.999
rpl13	rps13	SAMN05421752_101163	SAMN05421752_101157	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.999
rpl13	rps15	SAMN05421752_101163	SAMN05421752_10968	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S15.	0.999
rpl13	rps2	SAMN05421752_101163	SAMN05421752_101168	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rpl13	rps4	SAMN05421752_101163	SAMN05421752_101158	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpl13	rps9	SAMN05421752_101163	SAMN05421752_101164	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpl15e	rpl13	SAMN05421752_101104	SAMN05421752_101163	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rpl15e	rpl18e	SAMN05421752_101104	SAMN05421752_101162	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	Large subunit ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.999
rpl15e	rpl7ae	SAMN05421752_101104	SAMN05421752_101184	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.999
rpl15e	rpoD	SAMN05421752_101104	SAMN05421752_101160	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.	0.709
rpl15e	rps11	SAMN05421752_101104	SAMN05421752_101159	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	Small subunit ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.	0.999
rpl15e	rps13	SAMN05421752_101104	SAMN05421752_101157	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.999
rpl15e	rps15	SAMN05421752_101104	SAMN05421752_10968	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	Small subunit ribosomal protein S15.	0.999
rpl15e	rps2	SAMN05421752_101104	SAMN05421752_101168	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.999
rpl15e	rps4	SAMN05421752_101104	SAMN05421752_101158	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rpl15e	rps9	SAMN05421752_101104	SAMN05421752_101164	LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.	Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999