STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI17692.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)    
Predicted Functional Partners:
ACI17772.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.628
ACI16862.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.626
ACI17204.1
Homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.567
ACI17091.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
AIA24681.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.528
nuoF
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.513
tadA
tRNA adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.446
sfsA
Sugar fermentation stimulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SfsA family.
       0.422
ACI17508.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
ACI17683.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
Your Current Organism:
Coprothermobacter proteolyticus
NCBI taxonomy Id: 309798
Other names: C. proteolyticus DSM 5265, Coprothermobacter proteolyticus DSM 5265
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