STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI18522.1L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596. (229 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01234.
 
 
 0.981
xylB
Xylulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
 
 0.931
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.910
ACI20099.1
alpha-N-arabinofuranosidase; Identified by match to protein family HMM PF06964.
 
  
 0.838
ACI18585.1
Beta-glucuronidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
   
 
  0.805
ACI18372.1
Hidrolytic enzyme; Identified by match to protein family HMM PF02056.
   
 
  0.803
ACI19379.1
L-fucose isomerase related protein.
  
  
 0.750
ACI18736.1
Transcriptional regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
     
 0.686
ACI19869.1
Arabinosidase; Identified by match to protein family HMM PF02018.
 
  
 0.626
ACI18442.1
Conserved hypothetical protein.
   
   0.491
Your Current Organism:
Dictyoglomus thermophilum
NCBI taxonomy Id: 309799
Other names: D. thermophilum H-6-12, Dictyoglomus thermophilum H-6-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.