STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_0405NifU C-terminal domain protein. (657 aa)    
Predicted Functional Partners:
HVO_2676
HesB/IscA family iron-sulfur cluster assembly accessory protein.
  
 
 0.805
sdhB
Succinate dehydrogenase subunit B.
  
 
 0.724
glcK
Glucokinase.
  
    0.675
nuoI
NADH dehydrogenase-like complex subunit I.
  
  
 0.672
iscU
Iron-sulfur cluster assembly protein.
  
 
 0.664
HVO_1464
ABC-type transport system periplasmic substrate-binding protein.
  
     0.654
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
 0.644
HVO_1134
Uncharacterized protein.
  
     0.633
HVO_2165
ABC-type transport system permease protein.
 
   
 0.584
sph3
Smc-like protein Sph3.
  
     0.581
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.