STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_0506ABC-type transport system ATP-binding/permease protein. (645 aa)    
Predicted Functional Partners:
cdc48d
arNOG05511 family protein (AAA-type ATPase core domain protein); Belongs to the AAA ATPase family.
 
 0.778
dnaK
Hsp70-type molecular chaperone DnaK; Acts as a chaperone.
 
 0.762
HVO_0112
Tetratricopeptide repeat protein.
 
 0.717
nosF
ABC-type transport system ATP-binding protein (probable substrate copper).
0.713
HVO_1006
ABC-type transport system ATP-binding protein.
 
0.709
HVO_3002
ABC-type transport system ATP-binding protein.
 
0.708
HVO_1443
ABC-type transport system ATP-binding protein.
 
0.706
cdc48c
AAA-type ATPase (CDC48 subfamily).
   
 0.701
cdc48a
AAA-type ATPase (CDC48 subfamily).
   
 0.701
cdc48b
AAA-type ATPase (CDC48 subfamily).
   
 0.701
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.