STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_0621Sensor box histidine kinase. (580 aa)    
Predicted Functional Partners:
dsa2
Dihydrolipoamide S-acyltransferase.
    
 0.645
dsa1
Dihydrolipoamide S-acyltransferase.
    
 0.645
prsA
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P).
  
 0.598
lpdA
Dihydrolipoyl dehydrogenase.
    
 0.597
ark2
Adaptive-response sensory-kinase.
 
   0.566
ubiA3
UbiA family prenyltransferase.
       0.503
oadhB3
2-oxoacid dehydrogenase E1 component beta subunit.
    
 0.500
oadhB2
2-oxoacid dehydrogenase E1 component beta subunit.
    
 0.500
oadhB1
2-oxo-3-methylvalerate dehydrogenase E1 component beta subunit.
    
 0.500
HVO_2030
HTR-like protein.
 
 
   0.495
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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