STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpAHalocyanin. (207 aa)    
Predicted Functional Partners:
narB2
Rieske-type [2Fe-2S] iron-sulfur protein.
  
  
 0.593
narC2
Homolog to respiratory nitrate reductase b-type cytochrome subunit.
     
 0.546
HVO_0823
DUF420 family protein.
      
 0.540
hcpD
Halocyanin.
      
 0.540
hcpE
DUF5059 domain / halocyanin domain protein.
      
 0.540
HVO_2653
Uncharacterized protein.
      
 0.538
HVO_0826
Peptidase M42 family protein.
       0.481
nirK
Nitrite reductase, copper-containing.
  
   0.467
HVO_2153
Putative copper-containing oxidoreductase.
   
   0.463
nuoM
NADH dehydrogenase-like complex subunit M.
    
   0.420
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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