STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_0924ISH5-type transposase ISHvo11. (450 aa)    
Predicted Functional Partners:
HVO_1735
SWIM zinc finger domain protein.
  
     0.644
HVO_1261
Uncharacterized protein.
  
     0.614
mrr
Putative Mrr family endonuclease.
  
   
 0.608
HVO_1743
SWIM zinc finger domain protein.
  
     0.574
HVO_1260
Von Willebrand factor type A domain protein.
  
     0.554
rmeR
Type I site-specific deoxyribonuclease subunit RmeR.
      
 0.540
ureE
Urease accessory protein UreE.
  
     0.473
HVO_2289
Uncharacterized protein.
  
     0.463
HVO_1694
Uncharacterized protein.
  
     0.462
hcpE
DUF5059 domain / halocyanin domain protein.
  
     0.420
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.