STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HVO_1007Homolog to quinoprotein glucose dehydrogenase. (464 aa)    
Predicted Functional Partners:
pstS1
ABC-type transport system periplasmic substrate-binding protein (probable substrate phosphate).
  
  
 0.850
thiP
ABC-type transport system permease protein (probable substrate thiamine).
  
  
 0.746
sfuB
ABC-type transport system permease protein (probable substrate iron).
  
  
 0.746
speE
Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
    0.570
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
     
 0.564
HVO_1006
ABC-type transport system ATP-binding protein.
     
 0.547
HVO_1005
ABC-type transport system permease protein.
  
    0.539
aldH2
Aldehyde dehydrogenase.
  
  
 0.528
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
   
   0.525
thiQ
ABC-type transport system ATP-binding protein (probable substrate thiamine).
  
    0.479
Your Current Organism:
Haloferax volcanii
NCBI taxonomy Id: 309800
Other names: H. volcanii DS2, Haloferax volcanii ATCC 29605, Haloferax volcanii DS2, Haloferax volcanii DSM 3757, Haloferax volcanii str. DS2, Haloferax volcanii strain DS2
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